rs30758239 SNP Detail

Summary

• ID
  rs30758239
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83751193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGCC GCATGCATGC CTGTACCCCC
  R
  TGTCCCATTT CATAGCTTCC TTGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45960656	mCV24606548	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss133350196	ENSMUSSNP5571138	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321844800	CHEV_6_83724205	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30758239					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83751193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17617	CpG island 17617	854 bp proximal
Gm52907	predicted gene, 52907	1674 bp upstream
Rr632937	regulatory region 632937	35 bp proximal
Rr632938	regulatory region 632938	1458 bp proximal
Rr632939	regulatory region 632939	1592 bp proximal
Rr632940	regulatory region 632940	1685 bp proximal
Rr632941	regulatory region 632941	1990 bp proximal
Tex261	testis expressed gene 261	Intron
Tssr1911	transcription start site region 1911	1717 bp upstream
Tssr57375	transcription start site region 57375	1427 bp upstream
Tssr61705	transcription start site region 61705	1349 bp downstream
Tssr61706	transcription start site region 61706	1364 bp downstream
Tssr61707	transcription start site region 61707	1371 bp downstream
Tssr61708	transcription start site region 61708	1399 bp downstream
Tssr61709	transcription start site region 61709	1458 bp downstream
Tssr61710	transcription start site region 61710	1535 bp downstream
Tssr61711	transcription start site region 61711	1556 bp downstream