rs30757877 SNP Detail

Summary

• ID
  rs30757877
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27243122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTAGCC CAGAAGGAGA
  GGTGAATGCT GGTGTACTAA TTTGACTTTA GAATATTAGT GAATAGGCTT TAATGATTTT
  CTTTTTTGAA ACATTGTCAT GTTCTGTGAC TGTGAACTTG TGATAATTCC CCATCAGACT
  CTGGAACACT GGGACTGTGG TAGTGGGCTA CTGTGCTTGG TAGGGGACAG TTTTGTATGC
  M
  ACCTCCAGAC TTGGAATGAA GACCACTATG TCACAGAAGT TTGAGGGGTC AGTAACCATA
  GTGATATGAT TAGCTAATTC AGTTGGATTT CCTACAAAGA CAAGGCAGCA GAAAGGCTTC
  ACCTTCAGGG AGGTATTTAC TCTGTATTTA TTCTAATAGG TGAGCAGGTT GACTTGTGTT
  CAGCAGACAG CACTTGGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45463040	mCV27552858	ABI	CRAMUS_MOUSE	f	SNP		A	C					A
ss60380393	NES15883738	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	A	A	C		C	A	A	A	C	A	A	A
ss134702608	ENSMUSSNP3023194	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30757877					SNP	A	A	C	C	A	A	C	A	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380393	NES15883738	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27243122 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nceh1	neutral cholesterol ester hydrolase 1			Intron
				Noncoding-Transcript-Variant
Rr374718	regulatory region 374718			239 bp upstream
Rr574359	regulatory region 574359			197 bp distal
Rr574360	regulatory region 574360			661 bp proximal
Rr574361	regulatory region 574361			1810 bp proximal
Tssr28607	transcription start site region 28607			564 bp downstream
Tssr28608	transcription start site region 28608			532 bp downstream
Tssr28609	transcription start site region 28609			515 bp downstream