CCAGG ACAGCCAGAG CTACACAGTG R AACCTGTCTT GAAGTGAGAA GAAAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|---|
ss45462852 | mCV25256695 | ABI | CRAMUS_MOUSE | f | SNP | A | G | A | ||
ss135474281 | ENSMUSSNP3913213 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | G | A | ||
ss320836905 | CHEV_3_89052227 | CHEVERUD | SCREENING_POP | f | SNP | G | A | |||
SNP Consensus Information | ||||||||||
SNP | Consensus Type | 129X1/SvJ |
A/J |
DBA/2J |
LG/J |
SM/J |
||||
rs30757869 | SNP | A | G | A | G | A |
Location: Chr3:89155612 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi13413 | CpG island 13413 | 1381 bp distal | ||||||
Krtcap2 | keratinocyte associated protein 2 | Intron | ||||||
Rr579998 | regulatory region 579998 | 1861 bp distal | ||||||
Rr579999 | regulatory region 579999 | 1921 bp distal | ||||||
Rr580000 | regulatory region 580000 | 1738 bp distal | ||||||
Rr580001 | regulatory region 580001 | 1948 bp proximal | ||||||
Trim46 | tripartite motif-containing 46 | 1996 bp upstream | ||||||
Tssr30085 | transcription start site region 30085 | 1812 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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