rs30757859 SNP Detail

Summary

• ID
  rs30757859
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58424300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGAATAA AAGGGACACG
  TGAACTTTCT ATCCCATCTG CACCGTTTCT GTAAACCTAC GGTTATTTTT AGAGGGGCTG
  TGGTATCAAA TCCTAGTTCC TTCCTTCTAA GCAGTTTTGC TTTCCTTTCA AGAGTCTGCA
  CACCGGCACA GTCTGTCTTT TTCACATGCA GAGGGCAAGT CTGCTCTACA GCAACAGACG
  W
  GTCATAAGGG CCTTTGTATA AACAAACGCT GAAACCAATT CTCCCCCTTG CCAGTTTCTT
  CCTCTTTTTT TTCCCCCAGT GCAGCAGATC TTTGAGGACC AAGTGCAAAC AAAATGTATT
  CCATGTATGG GCTGAATAGC TGAATATGAA TCGTAATCAT GCAAGTTTTC AGTAGTTATT
  CAAAAGGCAA TGTTGCCTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981041	NES10792921	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30757859					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981041	NES10792921	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58424300 () rs orientation: forward

Symbol	Name	Function Class
Gm65507	predicted gene, 65507	1121 bp upstream
Rr397679	regulatory region 397679	21 bp downstream
Rr397680	regulatory region 397680	378 bp upstream
Rr577244	regulatory region 577244	370 bp distal
Rr577245	regulatory region 577245	631 bp proximal
Rr577246	regulatory region 577246	1132 bp proximal
Tssr29205	transcription start site region 29205	609 bp upstream
Tssr29206	transcription start site region 29206	658 bp upstream