rs30757857 SNP Detail

Summary

• ID
  rs30757857
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58424235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAAACTA TTGCTAAGTT
  CTGAACTTGA CAAATGTACC ATCGTATTGA TGTCAATGTA AAGGCAGCTG AATAAAAGGG
  ACACGTGAAC TTTCTATCCC ATCTGCACCG TTTCTGTAAA CCTACGGTTA TTTTTAGAGG
  GGCTGTGGTA TCAAATCCTA GTTCCTTCCT TCTAAGCAGT TTTGCTTTCC TTTCAAGAGT
  M
  TGCACACCGG CACAGTCTGT CTTTTTCACA TGCAGAGGGC AAGTCTGCTC TACAGCAACA
  GACGTGTCAT AAGGGCCTTT GTATAAACAA ACGCTGAAAC CAATTCTCCC CCTTGCCAGT
  TTCTTCCTCT TTTTTTTCCC CCAGTGCAGC AGATCTTTGA GGACCAAGTG CAAACAAAAT
  GTATTCCATG TATGGGCTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981039	NES10792920	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30757857					SNP	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981039	NES10792920	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58424235 () rs orientation: forward

Symbol	Name	Function Class
Gm65507	predicted gene, 65507	1186 bp upstream
Rr397679	regulatory region 397679	within coordinates
Rr397680	regulatory region 397680	443 bp upstream
Rr577244	regulatory region 577244	305 bp distal
Rr577245	regulatory region 577245	696 bp proximal
Rr577246	regulatory region 577246	1197 bp proximal
Tssr29205	transcription start site region 29205	674 bp upstream
Tssr29206	transcription start site region 29206	723 bp upstream