rs30757855 SNP Detail

Summary

• ID
  rs30757855
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58424019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAACTTGG TAACTTTAGG
  TTCTGAAGCA AAGACCAGAA CACCAACACC TGTAAGATCC AAGTGATGTC CAAGTTAAAG
  TATTGTTCCC AAGCTAACTT TGTTTGTTTT GTTTGAGATG CCAAGTGTTA ACTCTTTGTA
  GCTCAAAGTG GCTTCAGAGC TGATCCTTCT GTTTCAGCCT TATGGAACAG TGCTGAGGTA
  Y
  AAGCATTTAC AGCCATGCCA AACTATTGCT AAGTTCTGAA CTTGACAAAT GTACCATCGT
  ATTGATGTCA ATGTAAAGGC AGCTGAATAA AAGGGACACG TGAACTTTCT ATCCCATCTG
  CACCGTTTCT GTAAACCTAC GGTTATTTTT AGAGGGGCTG TGGTATCAAA TCCTAGTTCC
  TTCCTTCTAA GCAGTTTTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981037	NES10792939	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30757855					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981037	NES10792939	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58424019 () rs orientation: forward

Symbol	Name	Function Class
Gm65507	predicted gene, 65507	1402 bp upstream
Rr397679	regulatory region 397679	within coordinates
Rr397680	regulatory region 397680	659 bp upstream
Rr577244	regulatory region 577244	89 bp distal
Rr577245	regulatory region 577245	912 bp proximal
Rr577246	regulatory region 577246	1413 bp proximal
Tssr29205	transcription start site region 29205	890 bp upstream
Tssr29206	transcription start site region 29206	939 bp upstream