rs30757151 SNP Detail

Summary

• ID
  rs30757151
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80945825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAAA CCACAATGCT AATGTAGGCA
  K
  CCTAAAACTG GAATATTAAA TACCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45462635	mCV24540408	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss135389043	ENSMUSSNP4328984	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G		G
ss320813775	CHEV_3_80842440	CHEVERUD	SCREENING_POP	f	SNP					G		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30757151					SNP	G	G	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80945825 () rs orientation: forward

Symbol	Name	Function Class
Gm16000	predicted gene 16000	within coordinates
Gm64611	predicted gene, 64611	within coordinates
Pdgfc	platelet-derived growth factor, C polypeptide	Intron
Rr578683	regulatory region 578683	1409 bp distal
Rr578686	regulatory region 578686	1550 bp distal
Rr578687	regulatory region 578687	846 bp distal
Rr578688	regulatory region 578688	528 bp distal
Rr578689	regulatory region 578689	329 bp proximal
Rr578690	regulatory region 578690	855 bp proximal
Rr578691	regulatory region 578691	1042 bp proximal
Tssr29618	transcription start site region 29618	1780 bp downstream
Tssr29619	transcription start site region 29619	1507 bp downstream
Tssr29620	transcription start site region 29620	1442 bp downstream
Tssr29621	transcription start site region 29621	1313 bp downstream
Tssr29622	transcription start site region 29622	1293 bp downstream
Tssr29623	transcription start site region 29623	1127 bp downstream