rs30756820 SNP Detail

Summary

• ID
  rs30756820
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57753741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTC ACAGACTGAA TCCACACTAA
  K
  TTGTTAAACC ACATTAAGTA GTAAA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45463739	mCV22719531	ABI	CRAMUS_MOUSE	f	SNP	T	G	T	G
ss135204808	ENSMUSSNP3068661	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320781804	CHEV_3_57650242	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30756820					SNP	T	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57753741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13199	CpG island 13199	516 bp proximal
Gm66316	predicted gene, 66316	1607 bp upstream
Pfn2	profilin 2	Intron
Rr577167	regulatory region 577167	453 bp distal
Rr577168	regulatory region 577168	within coordinates
Rr577169	regulatory region 577169	815 bp proximal
Rr577170	regulatory region 577170	1749 bp proximal
Rr577171	regulatory region 577171	1794 bp proximal
Tssr33340	transcription start site region 33340	1158 bp downstream
Tssr33341	transcription start site region 33341	1370 bp downstream
Tssr33342	transcription start site region 33342	1404 bp downstream
Tssr33343	transcription start site region 33343	1760 bp downstream