rs30756807 SNP Detail

Summary

• ID
  rs30756807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:34072811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA TCTTGAAAGA ATATTCTAAA
  Y
  GAGAGAAGCC AATCACAGAA GCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45462326	mCV22842354	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss134762056	ENSMUSSNP2112009	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320700962	CHEV_3_33917584	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30756807					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:34072811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13066	CpG island 13066	792 bp proximal
Fxr1	FMR1 autosomal homolog 1	1322 bp upstream
Gm43077	predicted gene 43077	within coordinates
Rr575095	regulatory region 575095	606 bp proximal
Rr575096	regulatory region 575096	1126 bp proximal
Rr575097	regulatory region 575097	1457 bp proximal
Tssr28785	transcription start site region 28785	1207 bp upstream
Tssr28786	transcription start site region 28786	1239 bp upstream
Tssr28787	transcription start site region 28787	1255 bp upstream
Tssr28788	transcription start site region 28788	1270 bp upstream
Tssr28789	transcription start site region 28789	1285 bp upstream
Tssr28790	transcription start site region 28790	1413 bp upstream
Tssr28791	transcription start site region 28791	1421 bp upstream
Tssr32968	transcription start site region 32968	1135 bp downstream