rs30756732 SNP Detail

Summary

• ID
  rs30756732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58423964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAATTTG TTGGATTTAA
  AAAAAAAAAA AAAAAAAAAA GAGTGAAAGC TAAATTGCAA CTTGGTAACT TTAGGTTCTG
  AAGCAAAGAC CAGAACACCA ACACCTGTAA GATCCAAGTG ATGTCCAAGT TAAAGTATTG
  TTCCCAAGCT AACTTTGTTT GTTTTGTTTG AGATGCCAAG TGTTAACTCT TTGTAGCTCA
  R
  AGTGGCTTCA GAGCTGATCC TTCTGTTTCA GCCTTATGGA ACAGTGCTGA GGTATAAGCA
  TTTACAGCCA TGCCAAACTA TTGCTAAGTT CTGAACTTGA CAAATGTACC ATCGTATTGA
  TGTCAATGTA AAGGCAGCTG AATAAAAGGG ACACGTGAAC TTTCTATCCC ATCTGCACCG
  TTTCTGTAAA CCTACGGTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46981033	NES10792933	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30756732					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46981033	NES10792933	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58423964 () rs orientation: forward

Symbol	Name	Function Class
Gm65507	predicted gene, 65507	1457 bp upstream
Rr397679	regulatory region 397679	14 bp upstream
Rr397680	regulatory region 397680	714 bp upstream
Rr577244	regulatory region 577244	34 bp distal
Rr577245	regulatory region 577245	967 bp proximal
Rr577246	regulatory region 577246	1468 bp proximal
Tssr29205	transcription start site region 29205	945 bp upstream
Tssr29206	transcription start site region 29206	994 bp upstream