rs30755907 SNP Detail

Summary

• ID
  rs30755907
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58362789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAATTA CTGTCAGAAT
  GCATTTGAGC TCTTATATGT CAAAGCACTA TGTCCACTTG GAGAAATATG TTTGCATTTT
  TCTTTTATTG TTTCTGTACT TACTTCAGAC AGGAAACTAT TCCAGGCCAG TCTACTTTAT
  TATAGATTAT GCAAAGGTTA CCTCTCATGT CATTTAAAAA ATGAAATCAA CTTGGATGAC
  Y
  TTGTCTTCAC TTGTAAAGTC CAAGTTTCTT TCTGCCTTCT TATCTTCTTG GTAAAGCTAC
  ACATACTTGA TCATGACCAG GTGCTAAAGA GTAAGGAAAA CCTAGGAAGA AAAGCAGCTC
  GTGGGAGCCA GCTGTGATGA TACAGATGAG AAGGCACACT ACCTAATGGA GCATGGTTAC
  TTTGACTTCT TTCTTTGACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46980727	NES10793781	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30755907					SNP	T	T	T	T	T	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46980727	NES10793781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58362789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr577227	regulatory region 577227			627 bp distal
Rr577228	regulatory region 577228			278 bp distal
Rr577229	regulatory region 577229			9 bp proximal
Tsc22d2	TSC22 domain family, member 2			Intron
				Noncoding-Transcript-Variant