rs30755822 SNP Detail

Summary

• ID
  rs30755822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78502453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGGAAGGA GGGAAAAAAA AGGCAATCGG AGGCCAGAGA
  TCACAGGGTC TATGCAGCCT CCAGCTGGGC CTCTTAAAGA GTGTTGACAA CTTCACTGCA
  Y
  ACCTCCCTGG AGGGCTCTCT CACTCCCGGT TATAATTTGT CACATCTTCA CAGAATGCAA
  CCCTACTTCG CTTACCTCAC TTTGGCCATA TTTGAAAAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45463731	mCV23542538	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss47026149	NES10759771	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	C		C	T	C	C		C	C	C		T
ss135359214	ENSMUSSNP2398009	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss320807542	CHEV_3_78399068	CHEVERUD	SCREENING_POP	f	SNP													T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30755822					SNP	C	C	C	T	T	C	C	C	C	T	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47026149	NES10759771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78502453 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	200 bp upstream
Rr578423	regulatory region 578423	211 bp distal
Rr578424	regulatory region 578424	within coordinates
Tssr33603	transcription start site region 33603	781 bp upstream
Tssr33604	transcription start site region 33604	727 bp upstream
Tssr33605	transcription start site region 33605	712 bp upstream
Tssr33606	transcription start site region 33606	697 bp upstream
Tssr33607	transcription start site region 33607	624 bp upstream
Tssr33608	transcription start site region 33608	529 bp upstream