rs30752977 SNP Detail

Summary

• ID
  rs30752977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118623995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTGGGGC AGCTGTGTCT TAAGTGTGAT GTAACCACAT
  GTCTTCTGAG AAACACGTAT GTAGGTACCG TGTACAAATA AAACTGGCCT GCTGTAACTT
  Y
  GGCTTTTAGT CCAAGGTCCT GTACCTTTGC TCTTCTGTTG TCTTCAACTT CTGTGGGTCT
  TTTACTATAC ACACCCTTTA CATTATGGCT AAGAAATCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45960688	mCV27570605	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		C
ss48067774	NES11877215	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	T	T		T	C	T	C		T	C	T	T		C
ss133584727	ENSMUSSNP3293668	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
ss321925745	CHEV_6_118597052	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30752977					SNP	C	C	T	C	T	T	T	T	T	C	T	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48067774	NES11877215	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118623995 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cacna1c	calcium channel, voltage-dependent, L type, alpha 1C subunit			Intron
				Noncoding-Transcript-Variant
Rr637500	regulatory region 637500			1903 bp distal
Rr637501	regulatory region 637501			within coordinates
Rr637502	regulatory region 637502			176 bp distal