rs30752912 SNP Detail

Summary

• ID
  rs30752912
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136410575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTCAGAA CGCTAAGATA CAATTCGGAA ATTCTCCCTT
  GATTACTCAG GAACTATTGT GCTTTCTTTA TCGTTAATTA TTTTTAGATA ACAGAGTCAA
  Y
  AGATGTCCAG GGAGGAAGGA TTCTTATGAA ATGGTATTTG GGGCACCTCT ACTCATAGAG
  TTAGAGAGCG AACAGAATTT TTACAAATGA GAAGTTTGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45463293	mCV23946466	ABI	CRAMUS_MOUSE	f	SNP	T	T	T				T		C
ss46985555	NES10890632	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T		C	C	T		T	C	C		T
ss320974619	CHEV_3_136367778	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30752912					SNP	T	T	T	C	T	T	T	C	C	T	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46985555	NES10890632	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136410575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform			Intron
				Noncoding-Transcript-Variant
Rr375783	regulatory region 375783			within coordinates
Rr585850	regulatory region 585850			1640 bp distal
Rr585851	regulatory region 585851			44 bp distal
Rr585852	regulatory region 585852			117 bp proximal
Rr585853	regulatory region 585853			1815 bp proximal