rs30752512 SNP Detail

Summary

• ID
  rs30752512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:126389025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAAATGT TCAAATTTAA
  GGACATAAAA AACAAAATTT GCTTTTAAAA ACAAAAAGGA ATCAAAGCTA TATAAAAACC
  ACAGAGGAAC TTCAATAAGC TTCCAAGGGT GTCCCACAAT GACAACTGAA CAGCAGAGGC
  CCCCAGGTAG GAACAATACA AGACAAAGCG GGACGTGTGC TGATCCCACG TGCTTGGCAA
  Y
  GTCAAAAATC AGCACTAGGA ATCTAGTGCG TGGGCAGAAT ATCAAATGAT GTAAGTAAAA
  TTGAAGGGAA AATTATAGTA AAACAGGCCA GTAAATGACA TTTTCATGGG CAAAACAATG
  CAGACATTGA ATGATGACTA AATTCAAAAA GTATTTTCTT GTGTTGAGTG GGAGAGGGCT
  ATTAGAAGTA TGAGTAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45461655	mCV24012062	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss135836826	ENSMUSSNP1388416	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320946572	CHEV_3_126298294	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30752512					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126389025 () rs orientation: forward

Symbol	Name	Function Class
Camk2d	calcium/calmodulin-dependent protein kinase II, delta	926 bp upstream
Cpgi13785	CpG island 13785	676 bp proximal
Gm17225	predicted gene 17225	within coordinates
Rr367547	regulatory region 367547	772 bp upstream
Rr584646	regulatory region 584646	1085 bp proximal
Rr584647	regulatory region 584647	1510 bp proximal
Rr584648	regulatory region 584648	1622 bp proximal
Tssr31566	transcription start site region 31566	950 bp upstream
Tssr31567	transcription start site region 31567	976 bp upstream
Tssr31568	transcription start site region 31568	1032 bp upstream
Tssr31569	transcription start site region 31569	1437 bp upstream
Tssr31570	transcription start site region 31570	1585 bp upstream
Tssr31571	transcription start site region 31571	1617 bp upstream
Tssr31572	transcription start site region 31572	1726 bp upstream
Tssr31573	transcription start site region 31573	1862 bp upstream
Tssr31574	transcription start site region 31574	1923 bp upstream