rs30751697 SNP Detail

Summary

• ID
  rs30751697
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:54822327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC AGGCACAGTC CACAAACCTG
  R
  TCTTCAAGAC GTTTCTGCGA ATGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45460783	mCV22818608	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss135185565	ENSMUSSNP893503	ENSEMBL	ENSEMBL_Sanger	f	SNP		G		G
ss320773077	CHEV_3_54718828	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30751697					SNP	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54822327 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm31358	predicted gene, 31358			1113 bp upstream
Rr576863	regulatory region 576863			within coordinates
Rr576864	regulatory region 576864			115 bp proximal
Rr576865	regulatory region 576865			914 bp proximal
Rr576866	regulatory region 576866			971 bp proximal
Rr576867	regulatory region 576867			976 bp proximal
Rr576868	regulatory region 576868			1112 bp proximal
Sertm1	serine rich and transmembrane domain containing 1			Intron
				mRNA-UTR
Tssr33288	transcription start site region 33288			908 bp downstream
Tssr33289	transcription start site region 33289			961 bp downstream
Tssr33290	transcription start site region 33290			1079 bp downstream