rs30750454 SNP Detail

Summary

• ID
  rs30750454
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:137668601 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGATCCTG TCACCTCTGA
  TGGTAGCTTC CCCCTGCTCC AAATGTTACC AAGTATTTGT AATGAAAACC AGTGATATTT
  ATTTTAATTT TTCATGAAGG TGAAATACAT GCAGTCTATT CATAAATAGC TTATGCTCAG
  ATGAGTCACA TGTAGATAAA ACTTTAGTTA CCATCTGTGA TCTACCTGAC ACGCAGTGTA
  W
  GTACCTGTGT TCTCACATGT GCAGGTACAT GTGTGTATAA GCACACGTGC ACATGTATGC
  ACATGGTTGT GGAAGCCAGG GGTTAACCTC AGGTATCATT TGTCAGGAAT CTTCTCCATG
  GATTTTTTTT TTTTTTTGGC AAGGACTCTC ACTGAACCTG GGGTTCATCA ATTCAGCAAG
  TTCTGTGTGG CCAGTGAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
ss45461621	mCV27576207	ABI	CRAMUS_MOUSE	f	SNP		T		A		A
ss46992891	NES10880113	PERLEGEN	MM_PANEL2	f	SNP	A	T	T		T	A	A		T		A
ss135945650	ENSMUSSNP87630	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				A
ss320977306	CHEV_3_137625804	CHEVERUD	SCREENING_POP	f	SNP								T		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	PWD/PhJ	SM/J	WSB/EiJ
rs30750454					SNP	A	T	T	A	T	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46992891	NES10880113	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137668601 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dapp1	dual adaptor for phosphotyrosine and 3-phosphoinositides 1			Intron
				Noncoding-Transcript-Variant
Rr586037	regulatory region 586037			511 bp distal
Rr586038	regulatory region 586038			641 bp proximal