rs30750052 SNP Detail

Summary

• ID
  rs30750052
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101053516 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGATTTTT CTGATAGAGG
  GGAGGATCTC AGACTTGCCT GGGTACAGCT TTCTTTCATC TCAGTTTGAC AGGCATTAGG
  ACAGGCGGGA TGAATAGCTG TAGGTAAATT TACATTTTAA AGATGGGTGC AAGATGTCGA
  GGTTCTGATA ATAAAGAGGG GAGGTATAGA AACTACAAAT GACAAATGTG TCTGCTTCTC
  W
  ATCATCAGCT TATCACTGGT GATTACAAAA GATACTCCTT GGTTGTTAAT ACTACACAGC
  CCATTGGGAA AGAAAGAAGT CCTGGCTGGG AACTGTCCAA TTTGAATTTT TGATCTTTGT
  CCCAGATCAA CCGGGTATGA CAGAATATGT GAATCAGAAT TGGGCTTTTT ATTTCTGTCC
  CATCCTGAAT TGCAATTCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45461526	mCV25367557	ABI	CRAMUS_MOUSE	f	SNP		T	A
ss46811675	NES10722013	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	T	T	T	T		T	T	T	T		T
ss135544456	ENSMUSSNP1091137	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
ss320851105	CHEV_3_100950123	CHEVERUD	SCREENING_POP	f	SNP									A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30750052					SNP	T	T	A	A	T	T	T	T	A	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46811675	NES10722013	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101053516 () rs orientation: forward

Symbol	Name	Function Class
Rr581969	regulatory region 581969	within coordinates