rs30749055 SNP Detail

Summary

• ID
  rs30749055
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19682869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATAGTGAG AGCGCTCTCC GACCAGTCCC AGAGTACGGG
  TGTACTACCA CTAAGTCGGT TCCTCACGTA TGCGGTTGCG CGAGCCCGCG TTCCACGCAC
  S
  GGGGCGACCT TTTTCCCGGC CGCGCGGAGC AGTGACGTGG CGTTATGGAG CCCTTCCGTC
  AACCGGCTTG CCGCTCCCTT CGATAGCTCA GCTGGTAGA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45461509	mCV24689021	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss134669387	ENSMUSSNP1337344	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss320679307	CHEV_3_19528705	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30749055					SNP	G	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19682869 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	within coordinates
Cpgi13003	CpG island 13003	within coordinates
Cpgi13004	CpG island 13004	1145 bp proximal
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	290 bp upstream
n-TRacg3	nuclear encoded tRNA arginine 3 (anticodon ACG)	674 bp upstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	258 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	77 bp upstream
Rr574008	regulatory region 574008	39 bp distal
Rr574009	regulatory region 574009	within coordinates
Rr574010	regulatory region 574010	1519 bp proximal
Tssr32702	transcription start site region 32702	20 bp upstream