rs30748546 SNP Detail

Summary

• ID
  rs30748546
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18433788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGATGAAGC CACAATTCAT
  AGAGCAAGAT GAATCACCAT CACCCCAGAG CCTTAAAGAA AACTTCCAAA AGAAATTTAA
  AAAAGGAAAG AGAGGGAGAG AGAAGAAAAG AAATGAGGAA GTGGGTGAAG AGAGTATTAA
  AAACGTTTTA AGACAACATA AAAGAAGTTA AGAGAGGTCA GAGAATAGGG CACATTCTTT
  W
  CAAAAGGGTA GAAGACTTCA ATCCCTTTAC CTGATGCTGC TACCAAGAGG CTGTCTGAGG
  CACCGGGGCT ACGGGATGAG GCACTAACAG GGTTTATGGA AGAGCAAAAG GCAACGGTGG
  CGGGAATGAC AAGGGAGCTG TCTGAACATG CGGGTTGGTT CAGTCCAGGG GTTCCAGCAG
  GCCAGGCACC CACCTGAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45959176	mCV23958980	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30748546					SNP	A	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18433788 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			1653 bp upstream
Gm67618	predicted gene, 67618			1248 bp upstream
Rr626922	regulatory region 626922			758 bp proximal
Rr626923	regulatory region 626923			953 bp proximal