rs30748473 SNP Detail

Summary

• ID
  rs30748473
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32584254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCAT CTTCACTCGA GGAAAATAAA
  Y
  TAGGGATTAC AACCAAGATT TTTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45461053	mCV22804976	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss134750144	ENSMUSSNP3386004	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320698377	CHEV_3_32429027	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30748473					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32584254 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13058	CpG island 13058			210 bp distal
Gm66043	predicted gene, 66043			514 bp upstream
Mfn1	mitofusin 1			Intron
				Noncoding-Transcript-Variant
Rr397636	regulatory region 397636			552 bp downstream
Rr574981	regulatory region 574981			630 bp distal
Rr574982	regulatory region 574982			525 bp distal
Rr574983	regulatory region 574983			24 bp distal
Tssr28756	transcription start site region 28756			578 bp downstream
Tssr28757	transcription start site region 28757			562 bp downstream
Tssr28758	transcription start site region 28758			545 bp downstream
Tssr28759	transcription start site region 28759			477 bp downstream
Tssr28760	transcription start site region 28760			462 bp downstream