rs30747972 SNP Detail

Summary

• ID
  rs30747972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:57376055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAG AGAAGCTTGC ATCTGTAAGA
  Y
  TGGCCTGTGG GCAGACCTGT GGGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45459950	mCV22290760	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss135201495	ENSMUSSNP2009221	ENSEMBL	ENSEMBL_Sanger	f	SNP			T
ss320780668	CHEV_3_57272556	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30747972					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57376055 () rs orientation: forward

Symbol	Name	Function Class
Rr1931	regulatory region 1931	1487 bp proximal
Rr375020	regulatory region 375020	1444 bp upstream
Rr577104	regulatory region 577104	1495 bp proximal
Rr577105	regulatory region 577105	1575 bp proximal
Rr577106	regulatory region 577106	1746 bp proximal
Wwtr1	WW domain containing transcription regulator 1	Intron