rs30747543 SNP Detail

Summary

• ID
  rs30747543
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108449199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAAGGTT AGTGCTAGAT
  TTGTCAATCA AGTAACTGTT GACATTTGGA AAATGTTCCT TGCAGAGGCT ATAGGATATT
  GAGCAATATT TGTGACCTTT AGCTTGTTAG ATGCCACTCA CACACCCATA TGCCCAACCG
  AAAATGTCTC CAGGTATTTC CACTTCGCTG CTGGGGAAAG TTAGGGAGAA AAAAAAAAAA
  M
  AAAACCACTT TCACTACTGT CTGAGAACCA CTAGTCTAGA AGGGAGTATA AAGAGAAGGA
  GAGAAAAATA AACCTGCCAA GTCCCGCTGA GTACTGAATA TGAACCAGGT GTACGTTAGC
  CATCTTTCTG TTGCAGTAAT AAATACCTGA GGTATATAAA CCAAGGACCA GGGAATTTCT
  GTCTGAGTTC AGACTAATTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45959083	mCV24650735	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C
ss133503056	ENSMUSSNP6978854	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30747543					SNP	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108449199 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Gm44101	predicted gene, 44101	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	23 bp distal
Rr636116	regulatory region 636116	294 bp proximal
Rr636117	regulatory region 636117	577 bp proximal
Tssr58061	transcription start site region 58061	795 bp upstream
Tssr58062	transcription start site region 58062	829 bp upstream
Tssr58063	transcription start site region 58063	846 bp upstream
Tssr58064	transcription start site region 58064	877 bp upstream
Tssr62385	transcription start site region 62385	574 bp upstream
Tssr62386	transcription start site region 62386	298 bp downstream