rs30747098 SNP Detail

Summary

• ID
  rs30747098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:41019714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACG TGTGTGTGTG TGTGTGTGTG
  Y
  GCGCGCGTGC TGTAGGAGGA AGATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss44958645	mCV22807590	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss325808833	CHEV_19_41105765	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs30747098					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:41019714 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dntt	deoxynucleotidyltransferase, terminal			Intron
				Noncoding-Transcript-Variant
Rr370496	regulatory region 370496			1851 bp downstream
Rr370497	regulatory region 370497			within coordinates
Rr547544	regulatory region 547544			1860 bp distal
Rr547545	regulatory region 547545			within coordinates
Tssr5510	transcription start site region 5510			59 bp upstream
Tssr156412	transcription start site region 156412			1877 bp downstream
Tssr159242	transcription start site region 159242			139 bp upstream
Tssr159243	transcription start site region 159243			112 bp upstream
Tssr159244	transcription start site region 159244			95 bp upstream
Tssr159245	transcription start site region 159245			82 bp upstream
Tssr159246	transcription start site region 159246			769 bp downstream
Tssr159247	transcription start site region 159247			783 bp downstream