rs30746628 SNP Detail

Summary

• ID
  rs30746628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:101203893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCACCCGG GGACCTGGGG
  ACCTGGGGAG TGTGATCAGT GGACCTAGAC ATAAAATACT GAAGCTAAGA GTGCTGCGCC
  TGAGCCAGCT CCAGCATCCT AGGCAAAGGA GCCCTGTCGA AGAGAGGGAG GGACACACGC
  TCCCATCAAC GGAGGAAAGA GGCAGGCAAG CCGCAGAGGG AGGCTGAAGG TCCAGGAAGT
  Y
  GTGTGCTCCT TTCTAAAGGC ACTGAGAAGC CTTCATTGTT TACATCTTTC ACGGGGCATT
  TGGCAAGCGG TTTTTTAGAG CTAAGCACAC GATCGTGTTG TAAGATAACA GATATTGTGA
  TGTGGTTTTC TTTTCTTTTT GCAGTGAATA TTTACTGACC ACCTAGTACT CTGGTGCCTG
  ACTCTTTTAG ACCCCTGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45460134	mCV22287097	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					C		C
ss46813235	NES10715235	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		C	C	C	C	C	C	C	C	C
ss135546280	ENSMUSSNP4882819	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30746628					SNP	C	C	T	C	T	C	T	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46813235	NES10715235	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101203893 () rs orientation: forward

Symbol	Name	Function Class
Gm32803	predicted gene, 32803	within coordinates
Gm65445	predicted gene, 65445	909 bp upstream
Rr397890	regulatory region 397890	675 bp downstream
Rr581999	regulatory region 581999	595 bp distal
Rr582000	regulatory region 582000	855 bp distal
Rr582001	regulatory region 582001	26 bp proximal
Rr582002	regulatory region 582002	585 bp proximal
Tssr30898	transcription start site region 30898	904 bp upstream
Tssr30899	transcription start site region 30899	946 bp upstream
Tssr34786	transcription start site region 34786	11 bp upstream