rs30744840 SNP Detail

Summary

• ID
  rs30744840
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132917636 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTTTCTC GCCTTTAGAC
  TTTGTGTGTA TTCAAGTTTT CACCAAGTTT TTACATAGAA ACATATTTGT AGCCCAGTAC
  AGCCAACAGC TACCATCCCA GTCAGCAAGC AGCTACACAA ACAGCATACA GCTGAGAGTA
  AAGGAACCTT TAAGTTCTTA TCACCCAAAA CACCCCTGGG TGTCAAAGGA GCAATGTGTG
  K
  AGGTTCTCTC TGCCATTCTC CAACTCTGAC ACCCACAAAC ATTTTCCTTG GAGTGTGAGT
  GATGAATTTA AGTTATTTTT ATCAAATTTA ATTAATTAGA TTTTTGTCAG CCTTCAAAGC
  CAAGGATAAA CGACAGCTGC CACCATGTTG TAGAGAATAT GGAATGCAGC GAGCAGCTTG
  TGTGGACATT CTTTAAAACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46980450	NES10874610	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30744840					SNP	T	T	T	T	T	T	G	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46980450	NES10874610	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132917636 () rs orientation: forward

Symbol	Name	Function Class
Arhgef38	Rho guanine nucleotide exchange factor 38	Intron
Rr585514	regulatory region 585514	within coordinates
Rr585515	regulatory region 585515	1634 bp proximal