rs30744788 SNP Detail

Summary

• ID
  rs30744788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172340262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTCTCAT GTAGTTGGCC TTGAACTTGT GGCAGCCTTC
  CTGCCTCAGT CTATGGCTGG AATTACAGGG GTTTGCCACC GTATCTGATG ACTGAATGAT
  Y
  CTGAGCCAGA CGACAGAGTT ACAGGCTGTG CTTTGTGTGA AAGCTCTGTG AGGCTACCAG
  GTAAATGGTC TGAAATTTGG GTCAGGATTG TTGCAGTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss44959205	mCV24953289	ABI	CRAMUS_MOUSE	f	SNP		T	C							C
ss49751594	NES13027765	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	C	T		T	C	T	C	T	T	C	T	T
ss120011680	PARCsnp_1.19918	PARC_SEQ	INBRED	f	SNP								T		C
ss120014598	PARCsnp_1.09967	PARC_SEQ	INBRED	f	SNP								T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30744788					SNP	T	T	C	T	T	C	T	T	T	C	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49751594	NES13027765	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172340262 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	554 bp upstream
Gm57108	predicted gene, 57108	578 bp downstream
Gm70635	predicted gene, 70635	378 bp upstream
Rr396590	regulatory region 396590	241 bp upstream
Rr396591	regulatory region 396591	1339 bp upstream
Rr423599	regulatory region 423599	1653 bp distal
Rr423600	regulatory region 423600	1295 bp distal
Rr423601	regulatory region 423601	within coordinates
Rr423602	regulatory region 423602	319 bp proximal
Rr423603	regulatory region 423603	508 bp proximal
Rr423604	regulatory region 423604	1309 bp proximal
Rr423605	regulatory region 423605	1444 bp proximal
Tssr302	transcription start site region 302	1304 bp downstream
Tssr10235	transcription start site region 10235	550 bp upstream
Tssr10236	transcription start site region 10236	1426 bp upstream
Tssr15228	transcription start site region 15228	1238 bp downstream