rs30744766 SNP Detail

Summary

• ID
  rs30744766
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:21879781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATTT AGCAGGCTGA GTTTTTCTGG
  M
  AGGCAGTGCT GAGGAGGCCA AACTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J	WSB/EiJ
ss39250596	mCV23043813	ABI	CRAMUS_MOUSE	f	SNP	A				A	C
ss49166909	NES12506547	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A					C
ss139200679	ENSMUSSNP7194753	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					C
ss324566723	CHEV_14_22648935	CHEVERUD	SCREENING_POP	f	SNP							A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J	WSB/EiJ
rs30744766					SNP	A	A	C	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49166909	NES12506547	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:21879781 () rs orientation: forward

Symbol	Name	Function Class
Rr488602	regulatory region 488602	1066 bp proximal
Rr488603	regulatory region 488603	1078 bp proximal
Tssr124454	transcription start site region 124454	1806 bp upstream
Tssr124455	transcription start site region 124455	1818 bp upstream
Tssr127690	transcription start site region 127690	1410 bp downstream
Vdac2	voltage-dependent anion channel 2	Intron