rs30744344 SNP Detail

Summary

• ID
  rs30744344
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72358433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAC TTTCTCTTAG ATTCCTGGTG
  H
  GGGCCTTGCG GGATGGTCCT CTAAC                                      
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47979220	NES11920481	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C		C	T	C		T
ss321821596	CHEV_6_72331444	CHEVERUD	SCREENING_POP	f	SNP							A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30744344					SNP	T	C	T	T	T	C	A	C	T	C	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979220	NES11920481	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72358433 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632156	regulatory region 632156	1844 bp distal
Rr632157	regulatory region 632157	1039 bp distal
Rr632158	regulatory region 632158	492 bp distal
Rr632159	regulatory region 632159	862 bp distal
Rr632160	regulatory region 632160	1929 bp proximal
Tssr61448	transcription start site region 61448	967 bp upstream
Tssr61449	transcription start site region 61449	230 bp downstream
Tssr61450	transcription start site region 61450	304 bp downstream
Vamp5	vesicle-associated membrane protein 5	982 bp upstream