rs30743982 SNP Detail

Summary

• ID
  rs30743982
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132917325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGTGTTA CTTAGCAACT
  TGGTCATAAA TGTGGACCCT GGGGGCCCTT TGAGCTGTCA TGGGATGTTG GTCAAGATAT
  TCAGTTTCAA AAATGTTTTT CAGGAGCAAA AACCTTTTCA CAGAAGCTAA AGTTGAGCAA
  CCTTCTAGAT GTCTTTGTTT GTTCTTCTGA CTCAAGTTTA TTGCAGGAAC AAAGATTCAT
  S
  TTGCATCATT TTATGGTTAG CTCTTCAAAC ATCTTGATGT TTGCTTCCGT TCTTAAACTA
  ACAAACTCTC CACAGCGTAC CTACTGTGGA CACCAAGTTT TCTTTTACAA GCTTTTTCTC
  GCCTTTAGAC TTTGTGTGTA TTCAAGTTTT CACCAAGTTT TTACATAGAA ACATATTTGT
  AGCCCAGTAC AGCCAACAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46980442	NES10874606	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30743982					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46980442	NES10874606	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132917325 () rs orientation: forward

Symbol	Name	Function Class
Arhgef38	Rho guanine nucleotide exchange factor 38	Intron
Rr585514	regulatory region 585514	within coordinates
Rr585515	regulatory region 585515	1945 bp proximal