rs30743439 SNP Detail

Summary

• ID
  rs30743439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87655230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATTCCCTT TTGTGCTTAA TTGGTTCAAA CTGAGTTCTG
  TCCCTTGCAA CATGAGAAGC AATGGTCCTG TTAATCCAAC TTTAATAGTT TTCTTTAAGC
  R
  TGCCAAAGCA CAACTGTGAC CATGGCCACA GAGAAGACAC TCAAAAGTAA CTGTTGTCTA
  AATGAATATC CATAGAGCTG TGTTCCTAAA CCTTCCCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45459657	mCV24891972	ABI	CRAMUS_MOUSE	f	SNP		G	A						A
ss51576167	NES14670751	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A	G	A	G	A		G	G	A	G		G
ss135467948	ENSMUSSNP408769	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						A
ss320835318	CHEV_3_87551845	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30743439					SNP	G	G	A	A	A	A	A	G	A	G	A	A	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51576167	NES14670751	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87655230 () rs orientation: forward

Symbol	Name	Function Class
Lrrc71	leucine rich repeat containing 71	Intron
Pear1	platelet endothelial aggregation receptor 1	mRNA-UTR
Rr579535	regulatory region 579535	690 bp proximal
Rr579536	regulatory region 579536	1071 bp proximal
Rr579537	regulatory region 579537	1279 bp proximal
Tssr33946	transcription start site region 33946	610 bp downstream
Tssr33947	transcription start site region 33947	633 bp downstream
Tssr33948	transcription start site region 33948	654 bp downstream
Tssr33949	transcription start site region 33949	676 bp downstream
Tssr33950	transcription start site region 33950	696 bp downstream