rs30743349 SNP Detail

Summary

• ID
  rs30743349
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72356904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA GTGTTTATCT GTCAGCACGT
  M
  AGCACGGGGC CTCTACCAGG CATCT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47979214	NES11920595	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	A	C	C		C	C	C	C		C
ss133284302	ENSMUSSNP3006517	ENSEMBL	ENSEMBL_Sanger	f	SNP								A
ss321821590	CHEV_6_72329915	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30743349					SNP	C	C	C	C	C	A	C	A	C	C	A	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47979214	NES11920595	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72356904 () rs orientation: forward

Symbol	Name	Function Class
Gm52494	predicted gene, 52494	within coordinates
Rr632154	regulatory region 632154	1460 bp distal
Rr632155	regulatory region 632155	1252 bp distal
Rr632156	regulatory region 632156	315 bp distal
Rr632157	regulatory region 632157	within coordinates
Rr632158	regulatory region 632158	491 bp proximal
Rr632159	regulatory region 632159	646 bp proximal
Tssr61448	transcription start site region 61448	495 bp downstream
Tssr61449	transcription start site region 61449	1759 bp downstream
Tssr61450	transcription start site region 61450	1833 bp downstream
Vamp5	vesicle-associated membrane protein 5	Intron