rs30741184 SNP Detail

Summary

• ID
  rs30741184
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:8630061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAGAGAAACT CTGGGGTCTG GGAGTCTGAC AGGGTATCTA AGTTGTTGAT GTGGCTACAT
  GTGAATCTGT AATTACCACT ATTTCTTGGT CCTACAAAAG TCCCAGGCAG CCCTTGTAGC
  TGGCTGCCTT ATTTGGGGAT GTACAGTTCT GACCAATAGC TGCAGAACTG CCCATGGGGC
  CCCCTGCCCC TCTATTGCAC CTTCAATGAT GCTTTTCTTA GCACAGCTGG GTCTCCACAC
  AGAATCCACG ACTTGAGTTT GTATAGCAAA TGTTGTCTTA ATGTTTAAAA TTTTCTGTTT
  W
  AAAAAAAAAA AGGTTCCATG AGGCTCCTGG AGTTTATGCT TTTGAATTCA GCTACGGAAA
  AGATAAAAGG AGACACTAGG ATGTGCAAGG ATGGCTGCCT TCAATAGAAA GGTCCATGCA
  GCAGAAAGCA GCCCCACTCC TCTGCCAGTG TGGCACGTGG CCGCAGTCAA GTGTGGCAGG
  GGACAGTGTC TTCGGTTGTC TGGATCTTCA TCCAGAGCTC AGTGGACAGT GGCATGGCAG
  AAGGGCTCTT CCTGACACCT CTTCTGAGAG GGATGGGGAC GTGAGAAAGC ACTTTGAGCC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45959395	mCV24759678	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30741184					SNP	T	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8630061 () rs orientation: forward

Symbol	Name	Function Class
Ica1	islet cell autoantigen 1	466 bp downstream
Rr399563	regulatory region 399563	1916 bp upstream
Rr626420	regulatory region 626420	1465 bp proximal
Rr626421	regulatory region 626421	1896 bp proximal