rs30741080 SNP Detail

Summary

• ID
  rs30741080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72305041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGGGTCCC CACTCCACCC
  CAGGAGATGG CTTCCCAACA GACCAGGGAC ATCATTTCCA ATACTGCCCA CAATGTGTGC
  TTATGGGTAA GCACCCATAT TAGTAACAAA AAACAAGAGC AAAATAGACA AATTAAAAAT
  AATTGTTGAA GCTGGAAATG GTGACCTACA CTTGTAAGTC AGAACTTGAG TGTTGGAAGG
  Y
  GAACCAGGAG TTCAAAGCTC GTTCTACACA GAAAGTTCTA GGCTAACTTG CCTAGATAAG
  ACCTTAACTC AAAAAACAAA ACAGAATAAA AATAATAATT TTTGAAAGAT GAGATTTCTG
  TATTTACTGT TTCCAAACAT CGAAACTTCC CACCTCTCTC AACTCAGATA CAGGCATGAG
  CCATGTAGGA AGGAGCTCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47978720	NES11922000	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30741080					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978720	NES11922000	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72305041 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr632133	regulatory region 632133			1415 bp distal
Rr632134	regulatory region 632134			1505 bp distal
Rr632135	regulatory region 632135			1149 bp distal
Usp39	ubiquitin specific peptidase 39			Intron
				Noncoding-Transcript-Variant