rs30740596 SNP Detail

Summary

• ID
  rs30740596
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72286751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATTCTCT CAGTGACTCC
  GGGTGCACCT GAGTCCCCTG CTGTCTTGGA TGCTCAGTGA CCTGTGGACA GAACTGCTCT
  TTCCTAGAAG GGAGAAAGGG GATGCATCTG GGGTGCCCAC TCAGTTGGGC ACAGTGACAT
  CGTGCCAGAA GAAGGTTCTA TGGTTGTCCT TTCTCCACCT TCACCCCAGG GTGTGCTGGC
  Y
  GTGGCTGTGT CCCAGGTGTG CCACGTGGTA CCCCTGGGTG GTGGGTGGCA TCTGCCAGTG
  CCTGGCTGAG CGCTACACAG TTCTCCTGCT AGACGCACTG CTGGGCCGTG TGGTGCCCCA
  GCTAGTCTGT GGCCTTGTCC TCCGATGTTC CACTGAGGAT GCCATGGGCC CTGGTAAGAC
  TGCCGTCCCC TCCCCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978510	NES11923033	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30740596					SNP	T	T	C	T	T	T	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978510	NES11923033	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72286751 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr632127	regulatory region 632127			1278 bp distal
Sftpb	surfactant associated protein B			Coding-Synonymous
				Intron
Tssr57097	transcription start site region 57097			716 bp upstream
Tssr57098	transcription start site region 57098			856 bp upstream
Tssr57099	transcription start site region 57099			940 bp upstream
Tssr61420	transcription start site region 61420			999 bp downstream