rs30740324 SNP Detail

Summary

• ID
  rs30740324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72281048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGATGGGG GGGCGGGGGT
  CAGTAGTGGC CTAATGCACT CAGACAGCAC CGGCGCTGCA GCCAGCCCTG AACTGCTTTT
  TCTCTAAGCC CAGCCAGGTG TGGACATAGC CTCAGAGGAC CACGTGTCAG CTGAATCCCA
  TCTCATGCCC AGGAGGGGTG ACTGGGAGAG ATGGGCATCT GCTTCTGGGT AAAGCTACCT
  R
  AGAGCCACAG GGGACACAGA AATCTCAGCC TCACAGGGCA CTTTCCTGTT TGTCTAATGC
  TCCTCTCCCT AGCACCAGCC AGGAGTCTAT AGAATCAGAG GATTTTAAAG TAAGGGGGGA
  GTGGGAGGTC GGTGGCCCCA GGAGCACCCT AAGTGTGCCC TTCCGGCACT TACCCTGCGT
  CAAGAGCCAG GAAGGAAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
ss47978420	NES11924188	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	WSB/EiJ
rs30740324					SNP	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978420	NES11924188	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72281048 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	1170 bp distal
Rr632126	regulatory region 632126	56 bp proximal
Sftpb	surfactant associated protein B	546 bp upstream
Tssr57078	transcription start site region 57078	239 bp upstream
Tssr57079	transcription start site region 57079	255 bp upstream
Tssr57080	transcription start site region 57080	528 bp upstream
Tssr57081	transcription start site region 57081	562 bp upstream
Tssr57082	transcription start site region 57082	976 bp upstream
Tssr57083	transcription start site region 57083	1004 bp upstream
Tssr57084	transcription start site region 57084	1579 bp upstream
Tssr57085	transcription start site region 57085	1788 bp upstream
Tssr57086	transcription start site region 57086	1866 bp upstream
Tssr57087	transcription start site region 57087	1903 bp upstream
Tssr57088	transcription start site region 57088	1916 bp upstream