rs30740232 SNP Detail

Summary

• ID
  rs30740232
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72304723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATACTGATT GAAAATTATA
  ATCTGTCTAC TTCAAAACCC TCTGGACAAT GACCTTACAA AACAGCAAGT GAGAGACTCC
  CTTCTGATTC TCTGATTCTG CTAGTGAGGG ACTACAGGCT GTTTCCCTTC CAAACAGCAG
  AGTCATTAGA AGGGCATCTA GAAAATGGAG AAATGTTTAC AAAGGAAGGC ATTTGGAGCT
  W
  CCTCTAAAAC GTTAGCAAAA TAAAAGAGTG ACTTGTCAAA AAACCCAATG GTACAGTGTC
  TAGACTGCCC TTCCAGCTCA GTAAGAGAGA AACACTGAGC AAAAGGGGGC GGAGAGAAGA
  GGGTCCCCAC TCCACCCCAG GAGATGGCTT CCCAACAGAC CAGGGACATC ATTTCCAATA
  CTGCCCACAA TGTGTGCTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47978712	NES11921996	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	A	A	A	T	A	A	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30740232					SNP	A	A	T	A	A	A	T	A	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978712	NES11921996	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72304723 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr632133	regulatory region 632133			1097 bp distal
Rr632134	regulatory region 632134			1187 bp distal
Rr632135	regulatory region 632135			831 bp distal
Usp39	ubiquitin specific peptidase 39			Intron
				Noncoding-Transcript-Variant