rs30739802 SNP Detail

Summary

• ID
  rs30739802
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72286701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAATGA CTCAAGCCTT
  TAGAGTCAGA TCTATATTTG GTGTCAACTG CAGATTCTCT CAGTGACTCC GGGTGCACCT
  GAGTCCCCTG CTGTCTTGGA TGCTCAGTGA CCTGTGGACA GAACTGCTCT TTCCTAGAAG
  GGAGAAAGGG GATGCATCTG GGGTGCCCAC TCAGTTGGGC ACAGTGACAT CGTGCCAGAA
  R
  AAGGTTCTAT GGTTGTCCTT TCTCCACCTT CACCCCAGGG TGTGCTGGCT GTGGCTGTGT
  CCCAGGTGTG CCACGTGGTA CCCCTGGGTG GTGGGTGGCA TCTGCCAGTG CCTGGCTGAG
  CGCTACACAG TTCTCCTGCT AGACGCACTG CTGGGCCGTG TGGTGCCCCA GCTAGTCTGT
  GGCCTTGTCC TCCGATGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978506	NES11923030	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G	A	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30739802					SNP	G	G	A	G	G	G	G	G	A	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978506	NES11923030	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72286701 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	1228 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57097	transcription start site region 57097	766 bp upstream
Tssr57098	transcription start site region 57098	906 bp upstream
Tssr57099	transcription start site region 57099	990 bp upstream
Tssr61420	transcription start site region 61420	1049 bp downstream