rs30739798 SNP Detail

Summary

• ID
  rs30739798
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72286461 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCACACCC TGGTGACCTC
  TGTCACCCTT CAGCTAGAGC CTGCTTGGAA TTGGAGTTGA GGTAGGAGAT GTGCTGGCTT
  TCCCAGGGGT TCCAAAAGCC AAAGACATGT CAGCTCTGGG GGCCAGCAGA AGGAACTGCC
  TGTCTTCCTG ATGCATAAGC ATGGGAAGGT AGGTGGCCCT CGGTCAGGGA ATGGGTTTGA
  R
  TTGGGTCAGG CTGTTAGATG CCATGGCCTT GCAGCCCCCT TTCAAATGAC TCAAGCCTTT
  AGAGTCAGAT CTATATTTGG TGTCAACTGC AGATTCTCTC AGTGACTCCG GGTGCACCTG
  AGTCCCCTGC TGTCTTGGAT GCTCAGTGAC CTGTGGACAG AACTGCTCTT TCCTAGAAGG
  GAGAAAGGGG ATGCATCTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47978502	NES11923026	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30739798					SNP	A	A	G	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978502	NES11923026	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72286461 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	988 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57097	transcription start site region 57097	1006 bp upstream
Tssr57098	transcription start site region 57098	1146 bp upstream
Tssr57099	transcription start site region 57099	1230 bp upstream
Tssr61420	transcription start site region 61420	1289 bp downstream