rs30739391 SNP Detail

Summary

• ID
  rs30739391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72323765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGTGTCG TCCTCTTGCC
  TATACACACA CACTACAAAA ACAAAATTAA GGAAACCTAG GCACATTTAG ATTAAAGAGT
  CAACCAAGTG GCATATATTA ACATGTCTTC TTTAATTCTG CCATAAAGAA ATGTCATTTG
  TAGGGAAATG GTGAACCTAA AGATGTTAAG CGAATTCAGT ATAATTTAGA AAGAGTAATC
  R
  CCAATATTGC ATGTTTTTCC CATATGTAGG ACCTAGATTT TAAGTGTGTA TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTA AGAGGGGAGA GAAGGGGAGA GAACTATAGG
  AGGCAAGGAG GGGGTCTAAA AGAAGATGGA GCAGAGGTGA TGGAGATGAC AAAATATTTC
  TCATGAGCAG AATCTAGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss47978902	NES11921359	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs30739391					SNP	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978902	NES11921359	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72323765 () rs orientation: forward

Symbol	Name	Function Class
0610030E20Rik	RIKEN cDNA 0610030E20 gene	535 bp upstream
Gm45051	predicted gene 45051	247 bp downstream
Rr368102	regulatory region 368102	1377 bp downstream
Rr632136	regulatory region 632136	1108 bp distal
Rr632137	regulatory region 632137	61 bp distal
Rr632138	regulatory region 632138	62 bp proximal
Tssr57117	transcription start site region 57117	519 bp upstream
Tssr57118	transcription start site region 57118	600 bp upstream
Tssr57119	transcription start site region 57119	928 bp upstream
Tssr61434	transcription start site region 61434	1650 bp upstream
Tssr61435	transcription start site region 61435	1639 bp upstream
Tssr61436	transcription start site region 61436	1576 bp upstream
Tssr61437	transcription start site region 61437	898 bp downstream
Tssr61438	transcription start site region 61438	1036 bp downstream
Usp39	ubiquitin specific peptidase 39	1575 bp upstream