rs30739389 SNP Detail

Summary

• ID
  rs30739389
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72323057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTATGA GTCGGTGTTT
  CCTCTTTCTG ACCAGGTCTC ATTCACGTCT AGGGTAAGGC AGTCTGTTCC TTTACTTTCA
  ATATAACAAT TCCATCAAGC AGATGCACTT GATTCTGTCA CTGCTCTAAT AAGTTTCTGA
  TGTTTACATT TTAAACTGAA AACTTGGAAA GCTATACTCT CAGGATCAGG CAAAACAAAT
  S
  CCAAAGTTTA AGGCCAACTG AGCTACATAG TTAATTCAAG ACTATCCTAG GCTACATGCC
  AGAAGGAAAG AAACAAGAGA AGGCTATGCA CTATTAGACC CTCAAAAGCC TTGGTTCCTC
  TCATGGTCAG TTAAGCAAGT GGTCTGGACA CCAGCAGTGC AGCTCCAATG TGGCTGAAAT
  AGGGACTGGG TATGGGTGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978900	NES11921358	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30739389					SNP	G	G	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978900	NES11921358	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72323057 () rs orientation: forward

Symbol	Name	Function Class
0610030E20Rik	RIKEN cDNA 0610030E20 gene	1243 bp upstream
Cpgi17538	CpG island 17538	612 bp distal
Cpgi17539	CpG island 17539	1086 bp proximal
Gm45051	predicted gene 45051	955 bp downstream
Rr368102	regulatory region 368102	669 bp downstream
Rr632136	regulatory region 632136	400 bp distal
Rr632137	regulatory region 632137	190 bp proximal
Rr632138	regulatory region 632138	770 bp proximal
Tssr57117	transcription start site region 57117	1227 bp upstream
Tssr57118	transcription start site region 57118	1308 bp upstream
Tssr57119	transcription start site region 57119	1636 bp upstream
Tssr61434	transcription start site region 61434	942 bp upstream
Tssr61435	transcription start site region 61435	931 bp upstream
Tssr61436	transcription start site region 61436	868 bp upstream
Tssr61437	transcription start site region 61437	1606 bp downstream
Tssr61438	transcription start site region 61438	1744 bp downstream
Usp39	ubiquitin specific peptidase 39	867 bp upstream