rs30739302 SNP Detail

Summary

• ID
  rs30739302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72281030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAAAAGG ATCGGGGTCC
  TGATGGGGGG GCGGGGGTCA GTAGTGGCCT AATGCACTCA GACAGCACCG GCGCTGCAGC
  CAGCCCTGAA CTGCTTTTTC TCTAAGCCCA GCCAGGTGTG GACATAGCCT CAGAGGACCA
  CGTGTCAGCT GAATCCCATC TCATGCCCAG GAGGGGTGAC TGGGAGAGAT GGGCATCTGC
  Y
  TCTGGGTAAA GCTACCTAAG AGCCACAGGG GACACAGAAA TCTCAGCCTC ACAGGGCACT
  TTCCTGTTTG TCTAATGCTC CTCTCCCTAG CACCAGCCAG GAGTCTATAG AATCAGAGGA
  TTTTAAAGTA AGGGGGGAGT GGGAGGTCGG TGGCCCCAGG AGCACCCTAA GTGTGCCCTT
  CCGGCACTTA CCCTGCGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
ss47978418	NES11924186	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	WSB/EiJ
rs30739302					SNP	T	T	C	T	T	T	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978418	NES11924186	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72281030 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	1152 bp distal
Rr632126	regulatory region 632126	74 bp proximal
Sftpb	surfactant associated protein B	564 bp upstream
Tssr57078	transcription start site region 57078	257 bp upstream
Tssr57079	transcription start site region 57079	273 bp upstream
Tssr57080	transcription start site region 57080	546 bp upstream
Tssr57081	transcription start site region 57081	580 bp upstream
Tssr57082	transcription start site region 57082	994 bp upstream
Tssr57083	transcription start site region 57083	1022 bp upstream
Tssr57084	transcription start site region 57084	1597 bp upstream
Tssr57085	transcription start site region 57085	1806 bp upstream
Tssr57086	transcription start site region 57086	1884 bp upstream
Tssr57087	transcription start site region 57087	1921 bp upstream
Tssr57088	transcription start site region 57088	1934 bp upstream