rs30739296 SNP Detail

Summary

• ID
  rs30739296
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72280642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCAGCAC TTGGGAGGCA
  GAGGCAAACA GATTACTGTG AGATCAAGGC CTGCCTGGTC TTCAGAGCAA GTTCCAGGAC
  AAGCAGGGCT ACATAGAAAA AACCCGTCTC TATAAACAAA CAAAACAAAA CAAAACAAAA
  AAAAGCAGAT CTCGTGACTC TCTGAAGAAG GCCATTTCCC AGCCGTCCTT GGGGTTAGCC
  K
  TAAGTAGCAG GCTGTAGTGT CTCGAGGCCA CAAAAACTAG GAGAACCCTG GGACCACTTC
  CAGGGTGTCG TTTTACATCA CATGTCCAAC TATTTACCTT CATCTTGGGG CTAGCTCCCA
  CCCCATACAG CCTGTGAGTG CTGGAGGACT TTCTAGGGAG CCTCCGTAGG AAAGGCACTG
  GCAGGTCTCA GAAAAGGATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
ss47978412	NES11924180	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	PWD/PhJ	WSB/EiJ
rs30739296					SNP	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978412	NES11924180	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72280642 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	764 bp distal
Rr632126	regulatory region 632126	462 bp proximal
Sftpb	surfactant associated protein B	952 bp upstream
Tssr57078	transcription start site region 57078	645 bp upstream
Tssr57079	transcription start site region 57079	661 bp upstream
Tssr57080	transcription start site region 57080	934 bp upstream
Tssr57081	transcription start site region 57081	968 bp upstream
Tssr57082	transcription start site region 57082	1382 bp upstream
Tssr57083	transcription start site region 57083	1410 bp upstream
Tssr57084	transcription start site region 57084	1985 bp upstream