rs30738890 SNP Detail

Summary

• ID
  rs30738890
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72286238 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATGAGCAG CTTGGTCATT
  GACTACAGTG ACTATTGATT TACATCACCA TGACAGGAGA GCCATGTGTG GGTCAATGAT
  AACAGGTGGG TCTCTTAAGT GAAGTGCCCC ATTTGGGAGC CATCACACTC CAGGGGTGTC
  CATATTCTGA GTCCTCCCCC TGCCTCAACC TCCTGGCACT GGGGCTAGCT GGTCACATGG
  K
  CTGAATAAGG AGTAAAGGAA AAAGCCACAC CCTGGTGACC TCTGTCACCC TTCAGCTAGA
  GCCTGCTTGG AATTGGAGTT GAGGTAGGAG ATGTGCTGGC TTTCCCAGGG GTTCCAAAAG
  CCAAAGACAT GTCAGCTCTG GGGGCCAGCA GAAGGAACTG CCTGTCTTCC TGATGCATAA
  GCATGGGAAG GTAGGTGGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47978494	NES11923017	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30738890					SNP	G	G	G	G	G	G	T	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978494	NES11923017	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72286238 () rs orientation: forward

Symbol	Name	Function Class
Rr632127	regulatory region 632127	765 bp distal
Sftpb	surfactant associated protein B	Intron
Tssr57097	transcription start site region 57097	1229 bp upstream
Tssr57098	transcription start site region 57098	1369 bp upstream
Tssr57099	transcription start site region 57099	1453 bp upstream
Tssr61420	transcription start site region 61420	1512 bp downstream