rs30738523 SNP Detail

Summary

• ID
  rs30738523
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72322392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAGTCGA GATGGCCTCA
  TAGAAACGCA GCGCGCTACG AGTCGCTGTG AGGGACAATA CAGGCTTATA AAACGTTATA
  AGCGCTGCTG GCCCAACCGA GATAGTTTCG AACATATTGT GTCCTTGTCC AACATCTCTT
  CACGGCTTAA ATAGGAACCT TTCACAGGCT ACTTTCATTT TAGGGAAAAG GAAGCTAGCA
  Y
  TCCACCCGAG ATAGCTTCAG GACAATTTGT GTCTCGAAAC GACGATCCAG AGATGTCCCC
  TGATCAGGGA CTGATGACCT ACACAGGAAA AGGAGTCAGT ATTCCCAAAT TAACTCCTTC
  ATTCAGGCTT GTACCTGGGA ACTTCAATTA GTATCATATT TAAAGGGCTC TTGAAATGAG
  TTTGCAAATA CTCTGCTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47978894	NES11921355	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30738523					SNP	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978894	NES11921355	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72322392 () rs orientation: forward

Symbol	Name	Function Class
0610030E20Rik	RIKEN cDNA 0610030E20 gene	1908 bp upstream
Cpgi17538	CpG island 17538	within coordinates
Cpgi17539	CpG island 17539	1751 bp proximal
Gm45051	predicted gene 45051	1620 bp downstream
Rr368102	regulatory region 368102	4 bp downstream
Rr632136	regulatory region 632136	within coordinates
Rr632137	regulatory region 632137	855 bp proximal
Rr632138	regulatory region 632138	1435 bp proximal
Tssr57117	transcription start site region 57117	1892 bp upstream
Tssr57118	transcription start site region 57118	1973 bp upstream
Tssr61434	transcription start site region 61434	277 bp upstream
Tssr61435	transcription start site region 61435	266 bp upstream
Tssr61436	transcription start site region 61436	203 bp upstream
Usp39	ubiquitin specific peptidase 39	202 bp upstream