rs30738502 SNP Detail

Summary

• ID
  rs30738502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72302619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACCAAG TCAGTTGAAA
  AGAGACAACA TGGAAGGACT TCCAAACTCC TGGCCAGATG TGCAGCTGCA GATTTGGGAG
  GCTGAGGCAG GAGTTTCAGG AGTTCCAGAT CATTTTGTCA AGTCCAAGAA CAGCCTGGGC
  TACCTAAAAC CCTATCTAAA AAAGAAAGAT GTGGGGCTAC CCCAGCACAA GGAAGCAGGG
  Y
  GATACACACG TGATAGGGAA GTTGACAATT GTTGGATTCT TCTCCACAAA GAAGTTGTTC
  TTAGTAAATC TCTTGATGCA AAAGATTAGA TACGGAGGCA GCTTGGTGAG CTGGAAGCGT
  TTCAGGAAGT TCTCCTTATA AGTCTTGTAT TCCTACAAAG ACAATTTGAT GTCATCAGTG
  CCACCACTCA GGAGGTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47978692	NES11922062	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T	C	T	T	C	C	C	T
ss133283835	ENSMUSSNP1796825	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30738502					SNP	T	T	T	C	T	T	T	C	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978692	NES11922062	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72302619 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr632131	regulatory region 632131			1132 bp distal
Rr632132	regulatory region 632132			507 bp distal
Rr632133	regulatory region 632133			558 bp proximal
Rr632134	regulatory region 632134			896 bp proximal
Rr632135	regulatory region 632135			1252 bp proximal
Usp39	ubiquitin specific peptidase 39			Intron
				Noncoding-Transcript-Variant