rs30738496 SNP Detail

Summary

• ID
  rs30738496
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72301975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGAGAAA CCCTGTCTCG
  AAGGAAAAAA AAAAAATTAA AAACATTGGC TCTTTGGAAC TGAAAACCAA TGGTCTATCT
  TAGTGAGGTC TTTCTGAATT AGAAGGCAGC CAACTAAAAC CATCTGGTAT ACTTCTGGCT
  CCTTCAAAAT AGTCATGGGA ATTCAACTGC AGGGTAAATT AAAAAGTCCC ATATTAAAAT
  K
  TGTGACTTGG GCTGGAGAGA TGGCTCAGAG GTTAAGAGCA CTGACTGCTC TTCCAAAGGC
  CCTGAGTTCA ATTCCCAGCA GCCACATGGT GGTTCACAGC CATCTATAAT AGGATCTGAT
  GCCCTCTTCT GGTGTGTCTG AAGACAGCTA CAATGTACTC ATATTAAAAA AAAAAAATTT
  GTGACTTATG ACAGTGTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss47978686	NES11922123	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs30738496					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978686	NES11922123	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72301975 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr632131	regulatory region 632131			488 bp distal
Rr632132	regulatory region 632132			116 bp proximal
Rr632133	regulatory region 632133			1202 bp proximal
Rr632134	regulatory region 632134			1540 bp proximal
Rr632135	regulatory region 632135			1896 bp proximal
Usp39	ubiquitin specific peptidase 39			Intron
				Noncoding-Transcript-Variant