rs30738422 SNP Detail

Summary

• ID
  rs30738422
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72280130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTCCAA GGAGCCACCA
  AGAGGCAGAA AGAAATGAAG AGACACAAAG CAAGGCAGAA TAGCACTTCG GATGACACTG
  TCCGCATTGC CCGACAGATA TGGCACTAGA CTGCAGCCAA AGGACTCTCT GAAACTATTA
  ACAAGGTTGT GAGAACTTGT GACCAGTCTG TGAGGTGCTG TGTCTGGGTG TCATGCCACT
  S
  GGGACATCAT CAGTGTCACC AGTGGCACAG TGGAATGCCT GGTGAGCTGA GACACACAAA
  TGAGGCAGGC GTGGTGGGCA CACACCTGTA ATCCCAATGG GACGTAAACC TGGTATGGCA
  GTGCTCACCT GTATGTGGTG GCACTCAGGA AGTGGAGGCA GGAGCATTAG GAGTCTAAGG
  TCATCCTCAG CTACATTGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47978408	NES11924217	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30738422					SNP	G	G	G	G	G	C	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978408	NES11924217	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72280130 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	252 bp distal
Rr632126	regulatory region 632126	974 bp proximal
Sftpb	surfactant associated protein B	1464 bp upstream
Tssr57078	transcription start site region 57078	1157 bp upstream
Tssr57079	transcription start site region 57079	1173 bp upstream
Tssr57080	transcription start site region 57080	1446 bp upstream
Tssr57081	transcription start site region 57081	1480 bp upstream
Tssr57082	transcription start site region 57082	1894 bp upstream
Tssr57083	transcription start site region 57083	1922 bp upstream