rs30738418 SNP Detail

Summary

• ID
  rs30738418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72279858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTCTGG GAACTTCAGT
  TCACATGCTG AAAGGAGACC AAGGTTCAAC TTCCTTTGGT TCCCAAGTCC AGATTCATCT
  GACGTGGTCA CCCCCACCAC AGTGCTTACA TCTCATCCCT GTGACACTGA AGCTATGTGT
  CTGAGAGGCC TTGGTGGCCA AGTCGGTACC ATGTCTATCC TGACCCTAAG ATTAGTTCCT
  Y
  GGGTTTGAGG ATTGCAGCAA CACTGACCGT TCAGGCCCTG GTCAAGGTGG GGCTGCTGCT
  TCTTCCTTGG CTTCTTTCCA AGGAGCCACC AAGAGGCAGA AAGAAATGAA GAGACACAAA
  GCAAGGCAGA ATAGCACTTC GGATGACACT GTCCGCATTG CCCGACAGAT ATGGCACTAG
  ACTGCAGCCA AAGGACTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss47978404	NES11924210	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs30738418					SNP	C	C	T	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978404	NES11924210	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72279858 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	within coordinates
Rr632126	regulatory region 632126	1246 bp proximal
Sftpb	surfactant associated protein B	1736 bp upstream
Tssr57078	transcription start site region 57078	1429 bp upstream
Tssr57079	transcription start site region 57079	1445 bp upstream
Tssr57080	transcription start site region 57080	1718 bp upstream
Tssr57081	transcription start site region 57081	1752 bp upstream