rs30738416 SNP Detail

Summary

• ID
  rs30738416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72279685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGCAGGTC TCTGACATGC CAGCTCTCCG CAGACAGAAG
  TCATCCTTGT TGAATGTTTA ACGTGTGTAT AGCTTTTTTC TGGGAACTTC AGTTCACATG
  Y
  TGAAAGGAGA CCAAGGTTCA ACTTCCTTTG GTTCCCAAGT CCAGATTCAT CTGACGTGGT
  CACCCCCACC ACAGTGCTTA CATCTCATCC CTGTGACACT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47978402	NES11924206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30738416					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47978402	NES11924206	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72279685 () rs orientation: forward

Symbol	Name	Function Class
Rr632125	regulatory region 632125	within coordinates
Rr632126	regulatory region 632126	1419 bp proximal
Sftpb	surfactant associated protein B	1909 bp upstream
Tssr57078	transcription start site region 57078	1602 bp upstream
Tssr57079	transcription start site region 57079	1618 bp upstream
Tssr57080	transcription start site region 57080	1891 bp upstream
Tssr57081	transcription start site region 57081	1925 bp upstream